Introduction: Pepper is one of the most important vegetables in the world that belongs to the family of Solanaceae. It is used as a food flavoring, coloring agent and a pharmaceutical ingredient in different innovative ways. Capsicum annuum is one of the five cultivated species in the genus and the others are C. baccatum L., C. chinense, C. frutescens and C. pubescens. While C. pubescens and C. baccatum are morphologically quite distinct, C. annuum, C. chinense and C. frutescens show evidence of parallel evolution for a variety of plant and fruit morphological characteristics as a result of similar regimens of human selection. The near continuous overlapping in morphological traits among these three species led various authors to recognize them as a complicated species. Within complex, taxa are differentiated from one another based primarily on differences in corolla color, the presence or absence of a calyx constriction and the occurrence of multiple pedicels/node....